GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.13G132300 Manes.13G132300	Chromosome13	26033170	26034318	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.13G132300.1 Manes.13G132300.1 PAC:32338973	High	No	561		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -27.005 AMFE: -0.664 GC content %: 40.642
Mesculenta_Manes.13G132300.2 Manes.13G132300.2 PAC:32338974	High	No	552		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -26.558 AMFE: -0.652 GC content %: 40.761

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).