GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.15G169900 Manes.15G169900	Chromosome15	13964650	13968457	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.15G169900.1 Manes.15G169900.1 PAC:32350790	High	No	2667		Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -24.646 AMFE: -0.705 GC content %: 34.946
Mesculenta_Manes.15G169900.2 Manes.15G169900.2 PAC:32350791	High	No	600		Get ORF Coding potential... Type: noncoding Potential: -0.588 Folding energies... MFEI: -24.817 AMFE: -0.665 GC content %: 37.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).