Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mesculenta_Manes.16G031200 Manes.16G031200 |
Chromosome16 | 3380346 | 3383143 | Phytozome | v6.1 | Manihot_esculenta | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mesculenta_Manes.16G031200.1 Manes.16G031200.1 PAC:32342876 |
Low | No | 902 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -26.031 AMFE: -0.593 GC content %: 43.902 | |
Mesculenta_Manes.16G031200.2 Manes.16G031200.2 PAC:32342878 |
Low | No | 832 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.346 AMFE: -0.591 GC content %: 44.591 | |
Mesculenta_Manes.16G031200.3 Manes.16G031200.3 PAC:32342877 |
Low | No | 601 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -24.992 AMFE: -0.571 GC content %: 43.760 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mesculenta_Manes.16G031200.1 | SwissProt | 2015-06-01 | Q93ZJ3 | 1.0e-9 |
Mesculenta_Manes.16G031200.2 | SwissProt | 2015-06-01 | Q93ZJ3 | 3.0e-5 |
Mesculenta_Manes.16G031200.3 | SwissProt | 2015-06-01 | Q93ZJ3 | 1.0e-5 |