GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.S000700 Manes.S000700	Scaffold00256	328064	329424	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.S000700.1 Manes.S000700.1 PAC:32350279	Low	Yes	654		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -34.908 AMFE: -0.720 GC content %: 48.471
Mesculenta_Manes.S000700.2 Manes.S000700.2 PAC:32350280	High	No	572		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -32.063 AMFE: -0.689 GC content %: 46.503

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).