GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.A00466 Migut.A00466	scaffold_1	2442854	2444296	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.A00466.1 Migut.A00466.1 PAC:28939991	High	No	1249		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -28.231 AMFE: -0.675 GC content %: 41.793
Mguttatus_Migut.A00466.2 Migut.A00466.2 PAC:28939990	High	No	931		Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -31.031 AMFE: -0.681 GC content %: 45.542
Mguttatus_Migut.A00466.3 Migut.A00466.3 PAC:28939992	High	No	906		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -31.567 AMFE: -0.689 GC content %: 45.806

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).