Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mguttatus_Migut.A00515 Migut.A00515 |
scaffold_1 | 2689983 | 2692043 | Phytozome | v2.0 | Mimulus_guttatus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mguttatus_Migut.A00515.1 Migut.A00515.1 PAC:28939073 |
Low | No | 662 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -24.411 AMFE: -0.612 GC content %: 39.879 | |
Mguttatus_Migut.A00515.2 Migut.A00515.2 PAC:28939074 |
Low | No | 644 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -27.966 AMFE: -0.639 GC content %: 43.789 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mguttatus_Migut.A00515.1 | SwissProt | 2015-06-01 | Q2R8Z5 | 1.0e-9 |
Mguttatus_Migut.A00515.2 | SwissProt | 2015-06-01 | Q2R8Z5 | 3.0e-5 |