Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mguttatus_Migut.A00929 Migut.A00929 |
scaffold_1 | 5751374 | 5752135 | Phytozome | v2.0 | Mimulus_guttatus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mguttatus_Migut.A00929.1 Migut.A00929.1 PAC:28939759 |
Low | No | 658 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -20.957 AMFE: -0.610 GC content %: 34.347 | |
Mguttatus_Migut.A00929.2 Migut.A00929.2 PAC:28939760 |
High | No | 655 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -20.244 AMFE: -0.592 GC content %: 34.198 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mguttatus_Migut.A00929.1 | SwissProt | 2015-06-01 | Q05609 | 7.0e-5 |