Gene
Mguttatus Migut.A01106
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Mguttatus_Migut.A01106 Migut.A01106 |
scaffold_1 | 10593279 | 10596118 | Phytozome | v2.0 | Mimulus_guttatus | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Mguttatus_Migut.A01106.1 Migut.A01106.1 PAC:28938784 |
High | No | 659 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -24.765 AMFE: -0.549 GC content %: 45.068 | |
| Mguttatus_Migut.A01106.2 Migut.A01106.2 PAC:28938786 |
High | No | 636 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -25.173 AMFE: -0.560 GC content %: 44.969 | |
| Mguttatus_Migut.A01106.3 Migut.A01106.3 PAC:28938787 |
High | No | 697 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -24.620 AMFE: -0.550 GC content %: 44.763 | |
| Mguttatus_Migut.A01106.4 Migut.A01106.4 PAC:28938789 |
High | No | 743 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -25.316 AMFE: -0.573 GC content %: 44.145 | |
| Mguttatus_Migut.A01106.5 Migut.A01106.5 PAC:28938790 |
High | No | 682 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -24.370 AMFE: -0.550 GC content %: 44.282 | |
| Mguttatus_Migut.A01106.6 Migut.A01106.6 PAC:28938785 |
High | No | 630 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -25.429 AMFE: -0.560 GC content %: 45.397 | |
| Mguttatus_Migut.A01106.7 Migut.A01106.7 PAC:28938791 |
High | No | 677 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -24.417 AMFE: -0.566 GC content %: 43.131 | |
| Mguttatus_Migut.A01106.8 Migut.A01106.8 PAC:28938788 |
High | No | 451 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -24.523 AMFE: -0.494 GC content %: 49.667 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
