GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.B00750 Migut.B00750	scaffold_2	4234935	4237996	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.B00750.1 Migut.B00750.1 PAC:28946999	High	No	718		Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -23.287 AMFE: -0.624 GC content %: 37.326
Mguttatus_Migut.B00750.2 Migut.B00750.2 PAC:28946998	High	No	511		Get ORF Coding potential... Type: noncoding Potential: -0.509 Folding energies... MFEI: -23.973 AMFE: -0.613 GC content %: 39.139

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).