GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.F01382 Migut.F01382	scaffold_6	8810561	8812106	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.F01382.1 Migut.F01382.1 PAC:28932016	High	No	924		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -21.710 AMFE: -0.627 GC content %: 34.632
Mguttatus_Migut.F01382.2 Migut.F01382.2 PAC:28932017	High	No	892		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -21.973 AMFE: -0.628 GC content %: 34.978

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).