GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.G00108 Migut.G00108	scaffold_7	725838	728398	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.G00108.1 Migut.G00108.1 PAC:28943165	High	No	1726		Get ORF Coding potential... Type: noncoding Potential: -1.391 Folding energies... MFEI: -27.891 AMFE: -0.776 GC content %: 35.921
Mguttatus_Migut.G00108.2 Migut.G00108.2 PAC:28943164	Low	Yes	910		Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -32.286 AMFE: -0.849 GC content %: 38.022

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).