Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mguttatus_Migut.H01474 Migut.H01474 |
scaffold_8 | 16236891 | 16239089 | Phytozome | v2.0 | Mimulus_guttatus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mguttatus_Migut.H01474.1 Migut.H01474.1 PAC:28953105 |
High | No | 975 | Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -25.508 AMFE: -0.581 GC content %: 43.897 | |
Mguttatus_Migut.H01474.2 Migut.H01474.2 PAC:28953106 |
High | No | 897 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -25.941 AMFE: -0.585 GC content %: 44.370 | |
Mguttatus_Migut.H01474.3 Migut.H01474.3 PAC:28953107 |
High | No | 940 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -25.712 AMFE: -0.574 GC content %: 44.787 | |
Mguttatus_Migut.H01474.4 Migut.H01474.4 PAC:28953104 |
Low | No | 879 | Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -26.064 AMFE: -0.595 GC content %: 43.800 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mguttatus_Migut.H01474.4 | SwissProt | 2015-06-01 | Q93ZJ3 | 1.0e-3 |