GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.J01353 Migut.J01353	scaffold_10	15073427	15074997	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.J01353.1 Migut.J01353.1 PAC:28940547	High	No	587		Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -21.925 AMFE: -0.562 GC content %: 39.012
Mguttatus_Migut.J01353.2 Migut.J01353.2 PAC:28940548	High	No	730		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -25.548 AMFE: -0.673 GC content %: 37.945

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).