GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.M00099 Migut.M00099	scaffold_13	599444	600221	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.M00099.1 Migut.M00099.1 PAC:28948668	High	No	499		Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -23.828 AMFE: -0.580 GC content %: 41.082
Mguttatus_Migut.M00099.2 Migut.M00099.2 PAC:28948669	High	No	534		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -22.154 AMFE: -0.563 GC content %: 39.326
Mguttatus_Migut.M00099.3 Migut.M00099.3 PAC:28948670	High	No	417		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -24.029 AMFE: -0.615 GC content %: 39.089

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).