GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.N00493 Migut.N00493	scaffold_14	2448018	2450993	Phytozome	v2.0	Mimulus_guttatus	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.N00493.2 Migut.N00493.2 PAC:28924927	High	No	2269		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -24.870 AMFE: -0.655 GC content %: 37.946
Mguttatus_Migut.N00493.3 Migut.N00493.3 PAC:28924928	High	No	1471		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -24.500 AMFE: -0.617 GC content %: 39.701
Mguttatus_Migut.N00493.4 Migut.N00493.4 PAC:28924929	High	No	2092		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -23.770 AMFE: -0.629 GC content %: 37.763

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).