GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.O00307 Migut.O00307	scaffold_23	253207	254773	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.O00307.1 Migut.O00307.1 PAC:28920284	High	No	652		Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -22.301 AMFE: -0.673 GC content %: 33.129
Mguttatus_Migut.O00307.2 Migut.O00307.2 PAC:28920283	High	No	600		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -21.733 AMFE: -0.669 GC content %: 32.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).