GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.O00845 Migut.O00845	scaffold_2649	621	2728	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.O00845.1 Migut.O00845.1 PAC:28948095	High	No	616		Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -22.727 AMFE: -0.538 GC content %: 42.208
Mguttatus_Migut.O00845.2 Migut.O00845.2 PAC:28948096	High	No	606		Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -22.855 AMFE: -0.543 GC content %: 42.079

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).