Gene
MpusillaCCMP1545 MicpuC2.EuGene.0000040054
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| MpusillaCCMP1545_MicpuC2.EuGene.0000040054 MpusillaCCMP1545_MicpuC2.EuGene.0000040054 |
scaffold_4 | 103791 | 104111 | Phytozome | v3.0 | Micromonas_pusilla_CCMP1545 | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| MpusillaCCMP1545_56928 MpusillaCCMP1545_56928 PAC:27346322 |
High | No | 321 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -44.112 AMFE: -0.644 GC content %: 68.536 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
