Gene

MpusillaCCMP1545 MicpuC2.EuGene.0000130330

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

MpusillaCCMP1545_MicpuC2.EuGene.0000130330
MpusillaCCMP1545_MicpuC2.EuGene.0000130330
scaffold_13 657289 657615 Phytozome v3.0 Micromonas_pusilla_CCMP1545
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

MpusillaCCMP1545_52773
MpusillaCCMP1545_52773
PAC:27340064
Low Yes 327
Coding potential...
Type: noncoding Potential: -1.305
Folding energies...
MFEI: -51.070 AMFE: -0.717
GC content
%: 71.254


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

MpusillaCCMP1545_MicpuC2.EuGene.0000130330.png