GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaCCMP1545_e_gw1.8.797.1 MpusillaCCMP1545_e_gw1.8.797.1	scaffold_8	300496	300732	Phytozome	v3.0	Micromonas_pusilla_CCMP1545	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaCCMP1545_158479 MpusillaCCMP1545_158479 PAC:27338917	High	No	237		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -36.793 AMFE: -0.548 GC content %: 67.089

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).