GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaCCMP1545_estExt_fgenesh2_kg.C_2_t10250 MpusillaCCMP1545_estExt_fgenesh2_kg.C_2_t10250	scaffold_2	774599	775362	Phytozome	v3.0	Micromonas_pusilla_CCMP1545	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaCCMP1545_126309 MpusillaCCMP1545_126309 PAC:27342877	High	No	764		Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -25.694 AMFE: -0.595 GC content %: 43.194

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).