GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaCCMP1545_gm1.543_g MpusillaCCMP1545_gm1.543_g	scaffold_1	1177135	1177794	Phytozome	v3.0	Micromonas_pusilla_CCMP1545	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaCCMP1545_183462 MpusillaCCMP1545_183462 PAC:27344946	Low	Yes	300		Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -56.833 AMFE: -0.771 GC content %: 73.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).