GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaCCMP1545_gw1.16.407.1 MpusillaCCMP1545_gw1.16.407.1	scaffold_16	436752	437220	Phytozome	v3.0	Micromonas_pusilla_CCMP1545	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaCCMP1545_140547 MpusillaCCMP1545_140547 PAC:27343557	Low	Yes	252		Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -49.405 AMFE: -0.711 GC content %: 69.444

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
MpusillaCCMP1545_140547	SwissProt	2015-06-01	Q6DG43	2.0e-12

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).