GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaRCC299_AZW_fgenesh1_pg.C_scaffold_8000352 MpusillaRCC299_AZW_fgenesh1_pg.C_scaffold_8000352	Chr_11	67392	67785	Phytozome	v3.0	Micromonas_pusilla_RCC299	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaRCC299_114082 MpusillaRCC299_114082 PAC:27404767	High	No	294		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -41.939 AMFE: -0.632 GC content %: 66.327

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).