GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
MpusillaRCC299_gw2.04.732.1 MpusillaRCC299_gw2.04.732.1	Chr_04	236527	236865	Phytozome	v3.0	Micromonas_pusilla_RCC299	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
MpusillaRCC299_74537 MpusillaRCC299_74537 PAC:27400186	Low	No	339		Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -39.912 AMFE: -0.638 GC content %: 62.537

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
MpusillaRCC299_74537	SwissProt	2015-06-01	P31254	1.0e-18

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).