GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr1g111480 Medtr1g111480	chr1	50366515	50368272	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr1g111480.1 Medtr1g111480.1 PAC:31096398	High	No	889		Get ORF Coding potential... Type: noncoding Potential: -0.447 Folding energies... MFEI: -22.283 AMFE: -0.597 GC content %: 37.345
Mtruncatula_Medtr1g111480.2 Medtr1g111480.2 PAC:31096399	High	No	917		Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -22.050 AMFE: -0.595 GC content %: 37.077

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).