GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr1g113050 Medtr1g113050	chr1	51285375	51287420	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr1g113050.1 Medtr1g113050.1 PAC:31096768	High	No	897		Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -22.408 AMFE: -0.576 GC content %: 38.907
Mtruncatula_Medtr1g113050.2 Medtr1g113050.2 PAC:31096767	High	No	807		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -21.351 AMFE: -0.550 GC content %: 38.786

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).