GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr2g029093 Medtr2g029093	chr2	10841885	10843316	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr2g029093.1 Medtr2g029093.1 PAC:31062598	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.519 Folding energies... MFEI: -22.040 AMFE: -0.534 GC content %: 41.294
Mtruncatula_Medtr2g029093.2 Medtr2g029093.2 PAC:31062597	High	No	1054		Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -22.524 AMFE: -0.630 GC content %: 35.769

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).