GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr3g032390 Medtr3g032390	chr3	10205837	10213593	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr3g032390.1 Medtr3g032390.1 PAC:31055816	High	No	1133		Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -20.371 AMFE: -0.555 GC content %: 36.717
Mtruncatula_Medtr3g032390.2 Medtr3g032390.2 PAC:31055813	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -20.501 AMFE: -0.606 GC content %: 33.850
Mtruncatula_Medtr3g032390.3 Medtr3g032390.3 PAC:31055814	High	No	905		Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -20.972 AMFE: -0.666 GC content %: 31.492
Mtruncatula_Medtr3g032390.4 Medtr3g032390.4 PAC:31055815	High	No	487		Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -20.595 AMFE: -0.567 GC content %: 36.345

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).