GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr3g037510 Medtr3g037510	chr3	13784555	13787423	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr3g037510.1 Medtr3g037510.1 PAC:31059922	High	No	924		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -22.976 AMFE: -0.641 GC content %: 35.823
Mtruncatula_Medtr3g037510.2 Medtr3g037510.2 PAC:31059921	High	No	989		Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -22.841 AMFE: -0.645 GC content %: 35.389
Mtruncatula_Medtr3g037510.3 Medtr3g037510.3 PAC:31059920	High	No	801		Get ORF Coding potential... Type: noncoding Potential: -0.522 Folding energies... MFEI: -22.672 AMFE: -0.665 GC content %: 34.082

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).