Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mtruncatula_Medtr4g023900 Medtr4g023900 |
chr4 | 8116813 | 8118391 | Phytozome | Mt4.0v1 | Medicago_truncatula | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mtruncatula_Medtr4g023900.1 Medtr4g023900.1 PAC:31111670 |
High | No | 588 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -18.282 AMFE: -0.629 GC content %: 29.082 | |
Mtruncatula_Medtr4g023900.2 Medtr4g023900.2 PAC:31111671 |
Low | No | 416 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -17.981 AMFE: -0.558 GC content %: 32.212 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mtruncatula_Medtr4g023900.2 | RepBase (RepeatMasker) | 2014-01-31 | MuDr1_MT |