GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr4g043720 Medtr4g043720	chr4	14579528	14582035	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr4g043720.1 Medtr4g043720.1 PAC:31115364	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -17.198 AMFE: -0.490 GC content %: 35.103
Mtruncatula_Medtr4g043720.2 Medtr4g043720.2 PAC:31115365	High	No	782		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -18.542 AMFE: -0.516 GC content %: 35.934
Mtruncatula_Medtr4g043720.3 Medtr4g043720.3 PAC:31115366	High	No	2134		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -22.657 AMFE: -0.669 GC content %: 33.880

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).