GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr5g014860 Medtr5g014860	chr5	5052966	5054490	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr5g014860.1 Medtr5g014860.1 PAC:31089152	High	No	1525		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -23.357 AMFE: -0.671 GC content %: 34.820
Mtruncatula_Medtr5g014860.2 Medtr5g014860.2 PAC:31089151	High	No	1128		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -24.796 AMFE: -0.686 GC content %: 36.170

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).