GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr5g089030 Medtr5g089030	chr5	38683327	38688050	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr5g089030.2 Medtr5g089030.2 PAC:31086364	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -23.504 AMFE: -0.605 GC content %: 38.856

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).