Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mtruncatula_Medtr6g025460 Medtr6g025460 |
chr6 | 8870754 | 8871434 | Phytozome | Mt4.0v1 | Medicago_truncatula | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mtruncatula_Medtr6g025460.1 Medtr6g025460.1 PAC:31104589 |
High | No | 386 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -17.824 AMFE: -0.620 GC content %: 28.756 | |
Mtruncatula_Medtr6g025460.2 Medtr6g025460.2 PAC:31104588 |
Low | No | 589 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -19.559 AMFE: -0.678 GC content %: 28.862 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mtruncatula_Medtr6g025460.2 | RepBase (RepeatMasker) | 2014-01-31 | COP2_I_MT-int |