Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mtruncatula_Medtr6g092930 Medtr6g092930 |
chr6 | 35020649 | 35021778 | Phytozome | Mt4.0v1 | Medicago_truncatula | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mtruncatula_Medtr6g092930.1 Medtr6g092930.1 PAC:31103852 |
Low | Yes | 321 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -34.642 AMFE: -0.842 GC content %: 41.121 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mtruncatula_Medtr6g092930.1 | Rfam | 11.0 | mir-1265 | 0.01 |
Mtruncatula_Medtr6g092930.1 | miRBase | 21.0 | mtr-miR2592bl-3p | 0.008 |
Mtruncatula_Medtr6g092930.1 | SwissProt | 2015-06-01 | P93050 | 3.0e-8 |