GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr7g015060 Medtr7g015060	chr7	4533350	4540911	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr7g015060.1 Medtr7g015060.1 PAC:31077406	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -0.429 Folding energies... MFEI: -16.289 AMFE: -0.458 GC content %: 35.535
Mtruncatula_Medtr7g015060.2 Medtr7g015060.2 PAC:31077408	High	No	243		Get ORF Coding potential... Type: noncoding Potential: -0.486 Folding energies... MFEI: -16.955 AMFE: -0.485 GC content %: 34.979
Mtruncatula_Medtr7g015060.3 Medtr7g015060.3 PAC:31077409	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.588 Folding energies... MFEI: -14.311 AMFE: -0.429 GC content %: 33.333
Mtruncatula_Medtr7g015060.6 Medtr7g015060.6 PAC:31077405	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -18.997 AMFE: -0.549 GC content %: 34.591
Mtruncatula_Medtr7g015060.7 Medtr7g015060.7 PAC:31077407	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -0.429 Folding energies... MFEI: -16.289 AMFE: -0.458 GC content %: 35.535

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).