GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr7g032920 Medtr7g032920	chr7	11606593	11608061	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr7g032920.1 Medtr7g032920.1 PAC:31077935	High	No	612		Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -20.980 AMFE: -0.658 GC content %: 31.863
Mtruncatula_Medtr7g032920.2 Medtr7g032920.2 PAC:31077934	High	No	899		Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -22.859 AMFE: -0.680 GC content %: 33.593

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).