GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr7g071720 Medtr7g071720	chr7	26584299	26585079	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr7g071720.1 Medtr7g071720.1 PAC:31080524	High	No	448		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -18.415 AMFE: -0.616 GC content %: 29.911
Mtruncatula_Medtr7g071720.2 Medtr7g071720.2 PAC:31080523	High	No	567		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -19.735 AMFE: -0.654 GC content %: 30.159
Mtruncatula_Medtr7g071720.3 Medtr7g071720.3 PAC:31080522	High	No	593		Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -18.297 AMFE: -0.642 GC content %: 28.499
Mtruncatula_Medtr7g071720.4 Medtr7g071720.4 PAC:31080525	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -17.984 AMFE: -0.642 GC content %: 28.033

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).