GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mtruncatula_Medtr7g104410 Medtr7g104410	chr7	42308114	42309561	Phytozome	Mt4.0v1	Medicago_truncatula	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mtruncatula_Medtr7g104410.1 Medtr7g104410.1 PAC:31082492	High	No	589		Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -18.178 AMFE: -0.493 GC content %: 36.842
Mtruncatula_Medtr7g104410.2 Medtr7g104410.2 PAC:31082491	High	No	442		Get ORF Coding potential... Type: noncoding Potential: -0.661 Folding energies... MFEI: -20.204 AMFE: -0.580 GC content %: 34.842

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).