Gene

Mtruncatula Medtr8g086130

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mtruncatula_Medtr8g086130
Medtr8g086130
chr8 35752300 35752659 Phytozome Mt4.0v1 Medicago_truncatula
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mtruncatula_Medtr8g086130.1
Medtr8g086130.1
PAC:31071577
Low No 360
Coding potential...
Type: noncoding Potential: -0.918
Folding energies...
MFEI: -21.528 AMFE: -0.566
GC content
%: 38.056


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mtruncatula_Medtr8g086130.1  RepBase (RepeatMasker) 2014-01-31 HELMET2


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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