GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Olucimarinus_fgenesh1_pg.C_Chr_1000484 fgenesh1_pg.C_Chr_1000484	Chr_1	1078322	1078642	Phytozome	v2.0	Ostreococcus_lucimarinus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Olucimarinus_14024 14024 PAC:27417552	High	No	321		Get ORF Coding potential... Type: noncoding Potential: -0.520 Folding energies... MFEI: -31.558 AMFE: -0.542 GC content %: 58.255

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).