GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Olucimarinus_fgenesh1_pg.C_Chr_11000141 fgenesh1_pg.C_Chr_11000141	Chr_11	335562	335900	Phytozome	v2.0	Ostreococcus_lucimarinus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Olucimarinus_17339 17339 PAC:27420448	Low	Yes	339		Get ORF Coding potential... Type: noncoding Potential: -1.507 Folding energies... MFEI: -49.174 AMFE: -0.669 GC content %: 73.451

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).