GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os01g15399 LOC_Os01g15399	Chr1	8630317	8633592	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os01g15399.1 LOC_Os01g15399.1 PAC:24115820	High	No	2620		Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -24.126 AMFE: -0.644 GC content %: 37.443
Osativa_LOC_Os01g15399.2 LOC_Os01g15399.2 PAC:24115821	High	No	2728		Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -23.992 AMFE: -0.634 GC content %: 37.867

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).