Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os01g29804 LOC_Os01g29804 |
Chr1 | 16693961 | 16700745 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os01g29804.1 LOC_Os01g29804.1 PAC:24115771 |
Low | No | 1177 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -30.680 AMFE: -0.675 GC content %: 45.455 | |
Osativa_LOC_Os01g29804.2 LOC_Os01g29804.2 PAC:24115772 |
Low | No | 1222 | Get ORF Coding potential... Type: noncoding Potential: -0.870 Folding energies... MFEI: -29.935 AMFE: -0.665 GC content %: 45.008 | |
Osativa_LOC_Os01g29804.3 LOC_Os01g29804.3 PAC:24115773 |
Low | No | 1073 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -27.847 AMFE: -0.673 GC content %: 41.379 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os01g29804.3 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-A_LTR | |
Osativa_LOC_Os01g29804.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-A_LTR | |
Osativa_LOC_Os01g29804.2 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-A_LTR |