GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os01g35789 LOC_Os01g35789	Chr1	19823676	19826681	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os01g35789.1 LOC_Os01g35789.1 PAC:24120016	High	No	1958		Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -35.031 AMFE: -0.668 GC content %: 52.451
Osativa_LOC_Os01g35789.2 LOC_Os01g35789.2 PAC:24120017	High	No	1556		Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -29.248 AMFE: -0.665 GC content %: 43.959
Osativa_LOC_Os01g35789.3 LOC_Os01g35789.3 PAC:24120018	High	No	793		Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -34.981 AMFE: -0.680 GC content %: 51.450

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).