Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os02g37834 LOC_Os02g37834 |
Chr2 | 22835797 | 22838845 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os02g37834.3 LOC_Os02g37834.3 PAC:24134531 |
Low | No | 2706 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -25.177 AMFE: -0.589 GC content %: 42.720 | |
Osativa_LOC_Os02g37834.4 LOC_Os02g37834.4 PAC:24134532 |
High | No | 1086 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -26.335 AMFE: -0.647 GC content %: 40.700 | |
Osativa_LOC_Os02g37834.5 LOC_Os02g37834.5 PAC:24134533 |
Low | No | 1581 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -25.792 AMFE: -0.586 GC content %: 44.023 | |
Osativa_LOC_Os02g37834.6 LOC_Os02g37834.6 PAC:24134534 |
High | No | 776 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -31.031 AMFE: -0.599 GC content %: 51.804 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os02g37834.3 | RepBase (RepeatMasker) | 2014-01-31 | F1275 | |
Osativa_LOC_Os02g37834.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA-7_SBi |