Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os03g05220 LOC_Os03g05220 |
Chr3 | 2530961 | 2532705 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os03g05220.1 LOC_Os03g05220.1 PAC:24127885 |
High | No | 775 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.258 AMFE: -0.568 GC content %: 46.194 | |
Osativa_LOC_Os03g05220.2 LOC_Os03g05220.2 PAC:24127883 |
High | No | 468 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -30.491 AMFE: -0.530 GC content %: 57.479 |