GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os03g62030 LOC_Os03g62030	Chr3	35147241	35149805	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os03g62030.2 LOC_Os03g62030.2 PAC:24126618	High	No	1245		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -25.823 AMFE: -0.619 GC content %: 41.687
Osativa_LOC_Os03g62030.3 LOC_Os03g62030.3 PAC:24126619	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -25.322 AMFE: -0.637 GC content %: 39.776
Osativa_LOC_Os03g62030.4 LOC_Os03g62030.4 PAC:24126620	High	No	1119		Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -26.452 AMFE: -0.634 GC content %: 41.734
Osativa_LOC_Os03g62030.5 LOC_Os03g62030.5 PAC:24126621	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -26.505 AMFE: -0.623 GC content %: 42.525
Osativa_LOC_Os03g62030.6 LOC_Os03g62030.6 PAC:24126622	High	No	1602		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -26.467 AMFE: -0.631 GC content %: 41.948

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).