Gene
Osativa LOC Os04g25784
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Osativa_LOC_Os04g25784 LOC_Os04g25784 |
Chr4 | 14956367 | 14958705 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Osativa_LOC_Os04g25784.1 LOC_Os04g25784.1 PAC:24105559 |
High | No | 2175 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -24.000 AMFE: -0.602 GC content %: 39.862 | |
| Osativa_LOC_Os04g25784.2 LOC_Os04g25784.2 PAC:24105560 |
High | No | 1672 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -24.815 AMFE: -0.589 GC content %: 42.165 | |
| Osativa_LOC_Os04g25784.3 LOC_Os04g25784.3 PAC:24105561 |
High | No | 1679 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -25.003 AMFE: -0.594 GC content %: 42.108 | |
| Osativa_LOC_Os04g25784.4 LOC_Os04g25784.4 PAC:24105562 |
High | No | 1845 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -24.114 AMFE: -0.586 GC content %: 41.138 | |
| Osativa_LOC_Os04g25784.5 LOC_Os04g25784.5 PAC:24105563 |
High | No | 1665 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -24.649 AMFE: -0.585 GC content %: 42.162 | |
| Osativa_LOC_Os04g25784.6 LOC_Os04g25784.6 PAC:24105564 |
High | No | 1822 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -24.868 AMFE: -0.596 GC content %: 41.712 | |
| Osativa_LOC_Os04g25784.7 LOC_Os04g25784.7 PAC:24105565 |
High | No | 906 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -26.247 AMFE: -0.580 GC content %: 45.254 | |
| Osativa_LOC_Os04g25784.8 LOC_Os04g25784.8 PAC:24105566 |
High | No | 1430 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -25.147 AMFE: -0.590 GC content %: 42.587 | |
| Osativa_LOC_Os04g25784.9 LOC_Os04g25784.9 PAC:24105567 |
High | No | 1573 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -25.270 AMFE: -0.590 GC content %: 42.848 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
